Romboutsia
| Romboutsia | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Kingdom: | Bacillati |
| Phylum: | Bacillota |
| Class: | Clostridia |
| Order: | Peptostreptococcales |
| Family: | Peptostreptococcaceae |
| Genus: | Romboutsia Gerritsen et al. 2014[1] |
| Type species | |
| Romboutsia ilealis Gerritsen et al. 2014 | |
| Species | |
| |
Romboutsia is a genus of Gram-positive-staining, spore-forming, obligately anaerobic bacteria in the family Peptostreptococcaceae. Cells are rod-shaped and inhabit the gastrointestinal tract of mammals, where they ferment diverse carbohydrates and participate in bile acid transformations.[1][2]
Etymology
The genus name honours Dutch microbiologist Frans M. Rombouts for his contributions to food microbiology and probiotic research.[1]
Taxonomy and characteristics
Phylogenetic analysis of 16S rRNA genes and whole-genome data places Romboutsia within the class Clostridia, distinct from the polyphyletic ‘‘Clostridium’’ sensu lato group. Comparative genomics of the type strain Romboutsia ilealis CRIBT (R. ilealis) reveals extensive adaptation to the small intestine, including genes for bile-salt tolerance and rapid carbohydrate uptake.[3]
Recognised species (alphabetical order):
- Romboutsia faecis – cultured from human faeces in a gut microbiome biobank.[4]
- Romboutsia ilealis – type species, isolated from the rat ileum.[1]
- Romboutsia lituseburensis – reclassified from Clostridium lituseburense.[1]
- Romboutsia sedimentorum – isolated from alkaline-saline lake sediment in Daqing, China.[5]
- Romboutsia timonensis – cultured from the human gut in Marseille, France.[6]
Cells are catalase-negative rods with oval, subterminal spores. Optimal growth occurs at 37°C on complex media containing 0.5–2 % bile salts.
References
- 1 2 3 4 5 Gerritsen, Jeroen; Fuentes, Soledad; Grievink, William; Smidt, Hauke; Rijkers, Ger T.; de Vos, William M. (2014). "Characterization of Romboutsia ilealis gen. nov., sp. nov., isolated from the gastrointestinal tract of a rat, and proposal of Romboutsia gen. nov". International Journal of Systematic and Evolutionary Microbiology. 64 (5): 1600–1616. doi:10.1099/ijs.0.059543-0. PMID 24505019.
- ↑ Rosier, Brittan A.; Gerritsen, Jeroen (2022). "Genomic diversity and metabolic potential of the intestinal genus Romboutsia". Environmental Microbiology. 24 (6): 2740–2755. doi:10.1111/1462-2920.15980. PMID 35315574.
- ↑ Gerritsen, Jeroen; Hornung, Bart; Renckens, Bram; van Hijum, Sacha A. F. T.; Martins Dos Santos, Vítor A. P.; Rijkers, Ger T.; Schaap, Peter J.; de Vos, William M.; Smidt, Hauke (11 September 2017). "Genomic and functional analysis of Romboutsia ilealis CRIBT reveals adaptation to the small intestine". PeerJ. 5 e3698. doi:10.7717/peerj.3698. PMC 5598433. PMID 28924494.
- ↑ Liu, Caiyun; Du, Mingxue; Abuduaini, Reyimjan; Yu, Huayan (2021). "Enlightening the taxonomy darkness of human gut microbiomes with a cultured biobank". Microbiome. 9 (1): 119. doi:10.1186/s40168-021-01064-3. PMC 8140505. PMID 34020714.
- ↑ Wang, Yanwei; Song, Jinlong; Zhai, Yi; Zhang, Chi; Gerritsen, Jacoline; Wang, Huimin; Chen, Xiaorong; Li, Yanting; Zhao, Bingqiang; Ruan, Zhiyong (April 2015). "Romboutsia sedimentorum sp. nov., isolated from an alkaline-saline lake sediment, and emended description of the genus Romboutsia". International Journal of Systematic and Evolutionary Microbiology. 65 (4): 1193–1198. doi:10.1099/ijs.0.000079. PMID 25609678.
- ↑ Ricaboni, Daniel; Mailhe, Maïwenn; Khelaifia, Saber; Raoult, Didier; Million, Matthieu (13 April 2016). "Romboutsia timonensis, a new species isolated from human gut". New Microbes and New Infections. 12: 6–7. doi:10.1016/j.nmni.2016.04.001. PMC 4864248. PMID 27200178. (This paper currently has an expression of concern, see doi:10.1016/j.nmni.2024.101385, PMID 38799862, Retraction Watch)
External links
- Romboutsia – List of Prokaryotic names with Standing in Nomenclature (LPSN)
- Romboutsia type strain – BacDive Bacterial Diversity Metadatabase