Nocardiopsis
| Nocardiopsis | |
|---|---|
Scientific classification  | |
| Domain: | Bacteria |
| Kingdom: | Bacillati |
| Phylum: | Actinomycetota |
| Class: | Actinomycetes |
| Order: | Streptosporangiales |
| Family: | Nocardiopsaceae |
| Genus: | Nocardiopsis (Brocq-Rousseau 1904) Meyer 1976[1] |
| Type species | |
| Nocardiopsis dassonvillei (Brocq-Rousseau 1904) Meyer 1976 | |
| Species[2] | |
| Synonyms[3] | |
| |
Nocardiopsis is a bacterial genus from the family Nocardiopsaceae which can produces some antimicrobial compounds,[1][3][4] including thiopeptides.[5] Nocardiopsis occur mostly in saline and alkaline soils.[6]
Phylogeny
The currently accepted taxonomy is based on the List of Prokaryotic names with Standing in Nomenclature (LPSN)[1] and National Center for Biotechnology Information (NCBI).[2]
| 16S rRNA based LTP_10_2024[7][8][9] | 120 marker proteins based GTDB 09-RS220[10][11][12] | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
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Unassigned species:
- "N. benisuefensis" Hozzein 2003c
- "N. lambiniae" Nouioui et al. 2024
- "N. synnemasporogenes" El-Naggar 2014 em. Nouioui et al. 2018
- "N. tangguensis" Lu et al. 2002
- "N. viridoflava" Xie, Liu & Wang 2002b
- "N. yanglingensis" Yan et al. 2011
See also
References
- 1 2 3 A.C. Parte; et al. "Nocardiopsis". List of Prokaryotic names with Standing in Nomenclature (LPSN). Retrieved 2025-02-28.
- 1 2 C.L. Schoch; et al. "Nocardiopsis". National Center for Biotechnology Information (NCBI) taxonomy database. Retrieved 2025-02-28.
- 1 2 "Nocardiopsis". uniprot.org. Retrieved 2016-08-18.
- ↑ Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
- ↑ Engelhardt, K.; Degnes, K. F.; Kemmler, M.; Bredholt, H.; Fjaervik, E.; Klinkenberg, G.; Sletta, H.; Ellingsen, T. E.; Zotchev, S. B. (18 June 2010). "Production of a New Thiopeptide Antibiotic, TP-1161, by a Marine Nocardiopsis Species". Applied and Environmental Microbiology. 76 (15): 4969–4976. Bibcode:2010ApEnM..76.4969E. doi:10.1128/AEM.00741-10. PMC 2916467. PMID 20562278.
- ↑ (ed.), Koki Horikoshi (2011). Extremophiles handbook. Tokyo: Springer. ISBN 978-4-431-53897-4.
{{cite book}}:|last1=has generic name (help) - ↑ "The LTP". Retrieved 10 December 2024.
- ↑ "LTP_all tree in newick format". Retrieved 10 December 2024.
- ↑ "LTP_10_2024 Release Notes" (PDF). Retrieved 10 December 2024.
- ↑ "GTDB release 09-RS220". Genome Taxonomy Database. Retrieved 10 May 2024.
- ↑ "bac120_r220.sp_labels". Genome Taxonomy Database. Retrieved 10 May 2024.
- ↑ "Taxon History". Genome Taxonomy Database. Retrieved 10 May 2024.
Further reading
- Li, Hong-Wei; Zhi, Xiao-Yang; Yao, Ji-Cheng; Zhou, Yu; Tang, Shu-Kun; Klenk, Hans-Peter; Zhao, Jiao; Li, Wen-Jun; Brochier-Armanet, Celine (23 April 2013). "Comparative Genomic Analysis of the Genus Nocardiopsis Provides New Insights into Its Genetic Mechanisms of Environmental Adaptability". PLOS ONE. 8 (4) e61528. Bibcode:2013PLoSO...861528L. doi:10.1371/journal.pone.0061528. PMC 3634020. PMID 23626695.
- Zhang, Haibo; Saurav, Kumar; Yu, Ziquan; Mándi, Attila; Kurtán, Tibor; Li, Jie; Tian, Xinpeng; Zhang, Qingbo; Zhang, Wenjun; Zhang, Changsheng (24 June 2016). "α-Pyrones with Diverse Hydroxy Substitutions from Three Marine-Derived Nocardiopsis Strains". Journal of Natural Products. 79 (6): 1610–1618. Bibcode:2016JNAtP..79.1610Z. doi:10.1021/acs.jnatprod.6b00175. hdl:2437/229054. PMID 27300427.
- Pan, HQ; Zhang, DF; Li, L; Jiang, Z; Cheng, J; Zhang, YG; Wang, HF; Hu, JC; Li, WJ (October 2015). "Nocardiopsis oceani sp. nov. and Nocardiopsis nanhaiensis sp. nov., actinomycetes isolated from marine sediment of the South China Sea". International Journal of Systematic and Evolutionary Microbiology. 65 (10): 3384–91. doi:10.1099/ijsem.0.000425. PMID 26297579.
- Bennur, T.; Ravi Kumar, A.; Zinjarde, S.S.; Javdekar, V. (January 2016). "Nocardiopsis species: a potential source of bioactive compounds". Journal of Applied Microbiology. 120 (1): 1–16. doi:10.1111/jam.12950. PMID 26369300. S2CID 5266243.
- Patrice, Dion; Chandra Shekhar, Nautiyal (2007). Microbiology of Extreme Soils. Springer Science & Business Media. ISBN 978-3-540-74231-9.
- Horikoshi, Koki (1999). Alkaliphiles. Tokyo: Kodansha. ISBN 90-5702-458-6.
- Atta-ur-Rahman, edited by (1997). Studies in Natural Products Chemistry Indices Part A. Burlington: Elsevier. ISBN 0-08-048120-5.
{{cite book}}:|first1=has generic name (help) - Glasby, John S. (1992). Dictionary of antibiotic-producing organisms (1. publ. ed.). New York: Ellis Horwood. ISBN 0-13-210584-5.
- Staley, Don J. Brenner ... ed. Ed. board James T. (2005). Bergey's manual of systematic bacteriology (2nd ed.). New York: Springer. ISBN 0-387-28021-9.